PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_B181F1FD2.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 283aa    MW: 30833.8 Da    PI: 10.5009
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_B181F1FD2.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-15113159248
                            SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                            + WT+eEd+ll + v++ Gg+ +W++I r ++ gR  k+c++rw ++l
  Traes_4BL_B181F1FD2.2 113 KMWTKEEDDLLREQVRRCGGPhNWDSICRGLP-GRNSKSCRLRWCQHL 159
                            67******************************.***********9986 PP

2Myb_DNA-binding43.38.4e-14168210347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T +Ed l+v++ + +G++ W+tIa  +  gRt++ +k+rw+++
  Traes_4BL_B181F1FD2.2 168 PFTIQEDMLIVKYQATYGNR-WSTIADFLS-GRTDNAVKNRWNSV 210
                            8999****************.*********.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.971107163IPR017930Myb domain
SMARTSM007172.4E-11111161IPR001005SANT/Myb domain
SuperFamilySSF466898.27E-27111207IPR009057Homeodomain-like
PfamPF002492.5E-13112159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-15115164IPR009057Homeodomain-like
CDDcd001676.76E-13115159No hitNo description
SMARTSM007172.7E-11165213IPR001005SANT/Myb domain
PfamPF002491.9E-11168211IPR001005SANT/Myb domain
CDDcd001673.69E-10168211No hitNo description
Gene3DG3DSA:1.10.10.601.2E-17168212IPR009057Homeodomain-like
PROSITE profilePS5129416.257168215IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
TFHILVDRSC HIFLRTGSAG TAFPCSRRRL DSCSDPVPTP LRLYKAARSG GLPTPPATRP  60
PSPFRPLATA RTHARVSSIL CKKGDPSLGV MMPTSGNDAG ACDGDGSPHG VKKMWTKEED  120
DLLREQVRRC GGPHNWDSIC RGLPGRNSKS CRLRWCQHLD PRVEAVKPFT IQEDMLIVKY  180
QATYGNRWST IADFLSGRTD NAVKNRWNSV LRKRQEHAPS QQGQTRXQES LELCPPQAPG  240
ARPLPTGPDA PVGSFRCPTG RGPRGHAAVP AAVPWFGRGG VGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2311521430127MYB TRANSFORMING PROTEIN
3zqc_A2e-231162146102MYB3
3zqc_D2e-231162146102MYB3
3zqc_G2e-231162146102MYB3
3zqc_J2e-231162146102MYB3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519190.0JF951919.1 Triticum aestivum clone TaMYB21 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A096UQX40.0A0A096UQX4_WHEAT; Uncharacterized protein
STRINGMLOC_63274.12e-85(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.15e-34myb domain protein 77
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]